Difference between revisions of "HOWTO use the GlueX Singularity Container"
From GlueXWiki
m (→Set-Up the GlueX Environment) |
(→Get the Software and Support Files) |
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== Get the Software and Support Files == | == Get the Software and Support Files == | ||
| − | Use one of | + | Use one of three methods. |
=== 1. Tarball === | === 1. Tarball === | ||
| Line 17: | Line 17: | ||
# tar zxvf <directory containing tarball>/group_halld.tar.gz | # tar zxvf <directory containing tarball>/group_halld.tar.gz | ||
| − | === 2. rsync === | + | === 2. rsync with direct ssh === |
rsync -ruvt --delete scosg16.jlab.org:/cvmfs/oasis.opensciencegrid.org/gluex/group/ <directory that contains "group">/group/ | rsync -ruvt --delete scosg16.jlab.org:/cvmfs/oasis.opensciencegrid.org/gluex/group/ <directory that contains "group">/group/ | ||
| + | |||
| + | === 3. rsync through ssh tunnel === | ||
| + | |||
| + | <ol> | ||
| + | <li> Establish the tunnel | ||
| + | <pre> | ||
| + | ssh -t -L9001:localhost:9001 jlab.jlab.org ssh -t -L9001:localhost:22 scosg16 | ||
| + | </pre> | ||
| + | |||
| + | <li> In a separate shell instance, do the rsync | ||
| + | <pre> | ||
| + | rsync -ruvt --delete -e 'ssh -p9001' localhost:/cvmfs/oasis.opensciencegrid.org/gluex/group/ <directory that contains "group">/group/ | ||
| + | </pre> | ||
| + | </ol> | ||
== Get a Shell Inside the Container == | == Get a Shell Inside the Container == | ||
Revision as of 14:26, 10 April 2018
Contents
Install Singularity
See the instructions on the Singularity site.
Get the Container
Download gluex_centos7.img, the container.
Get the Software and Support Files
Use one of three methods.
1. Tarball
- Download the [tarball]. It's 40 GB.
- cd <directory that will contain "group">
- tar zxvf <directory containing tarball>/group_halld.tar.gz
2. rsync with direct ssh
rsync -ruvt --delete scosg16.jlab.org:/cvmfs/oasis.opensciencegrid.org/gluex/group/ <directory that contains "group">/group/
3. rsync through ssh tunnel
- Establish the tunnel
ssh -t -L9001:localhost:9001 jlab.jlab.org ssh -t -L9001:localhost:22 scosg16
- In a separate shell instance, do the rsync
rsync -ruvt --delete -e 'ssh -p9001' localhost:/cvmfs/oasis.opensciencegrid.org/gluex/group/ <directory that contains "group">/group/
Get a Shell Inside the Container
singularity shell --bind <directory that contains group>/group/halld:/group/halld <directory with container>/gluex_centos7.img
Set-Up the GlueX Environment
source /group/halld/Software/build_scripts/gluex_env_jlab.sh
