Pseudo-terminal will not be allocated because stdin is not a terminal. Error in gluex_env_version.sh: version xml file /u/scratch/gluex/nightly/2022-09-01/Linux_RHEL7-x86_64-gcc4.8.5/version_2022-09-01.xml not found, environment settings not done mkdir: created directory ‘/u/scratch/gluex/b1pi/2022-09-01/Linux_RHEL7-x86_64-gcc4.8.5’ mkdir: created directory ‘/u/scratch/gluex/b1pi/2022-09-01/Linux_RHEL7-x86_64-gcc4.8.5/11366’ info: number of threads not defined, using default value 1 info: vertex parameters not defined, using default values 0 0 50 80 info: random number seed not defined, using genr8 default (different seed each run) NEVENTS = 100000 VERTEX = 0 0 50 80 NTHREADS = 1 B1PI_TEST_DIR = /group/halld/Software/hd_utilities/b1pi_test RUN = 11366 SEED = Copying script files and macros ... ‘/group/halld/Software/hd_utilities/b1pi_test/b1pi_cron_one.sh’ -> ‘./b1pi_cron_one.sh’ ‘/group/halld/Software/hd_utilities/b1pi_test/b1pi_cron.sh’ -> ‘./b1pi_cron.sh’ ‘/group/halld/Software/hd_utilities/b1pi_test/b1pi_cron_two.sh’ -> ‘./b1pi_cron_two.sh’ ‘/group/halld/Software/hd_utilities/b1pi_test/b1pi_cron_two.sh~’ -> ‘./b1pi_cron_two.sh~’ ‘/group/halld/Software/hd_utilities/b1pi_test/b1_pi.input’ -> ‘./b1_pi.input’ ‘/group/halld/Software/hd_utilities/b1pi_test/b1pi_message.sh’ -> ‘./b1pi_message.sh’ ‘/group/halld/Software/hd_utilities/b1pi_test/b1pi_test.sh’ -> ‘./b1pi_test.sh’ ‘/group/halld/Software/hd_utilities/b1pi_test/b1pi_test_valgrind.sh’ -> ‘./b1pi_test_valgrind.sh’ ‘/group/halld/Software/hd_utilities/b1pi_test/hddm_counter.pl’ -> ‘./hddm_counter.pl’ ‘/group/halld/Software/hd_utilities/b1pi_test/index.html’ -> ‘./index.html’ cp: omitting directory ‘/group/halld/Software/hd_utilities/b1pi_test/macros’ ‘/group/halld/Software/hd_utilities/b1pi_test/my_b1pi_test.sh’ -> ‘./my_b1pi_test.sh’ ‘/group/halld/Software/hd_utilities/b1pi_test/README’ -> ‘./README’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/anal1.C’ -> ‘./anal1.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/b1_pi.C’ -> ‘./b1_pi.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/b1pi_gen.C’ -> ‘./b1pi_gen.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/b1pi_gen.h’ -> ‘./b1pi_gen.h’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/b1_pi.h’ -> ‘./b1_pi.h’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/b1pi_rec.C’ -> ‘./b1pi_rec.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/b1pi_rec.h’ -> ‘./b1pi_rec.h’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/fit_voigt.C’ -> ‘./fit_voigt.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/makeallplots.C’ -> ‘./makeallplots.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/mass_X.C’ -> ‘./mass_X.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/mk_pics.C’ -> ‘./mk_pics.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/momentum.C’ -> ‘./momentum.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/StandardLabels.C’ -> ‘./StandardLabels.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/theta.C’ -> ‘./theta.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/update_db.py’ -> ‘./update_db.py’ Running genr8 ... /group/halld/Software/hd_utilities/b1pi_test/b1pi_test.sh: line 111: genr8: command not found Converting generated events to HDDM ... /group/halld/Software/hd_utilities/b1pi_test/b1pi_test.sh: line 114: genr8_2_hddm: command not found Creating control.in file ... Running hdgeant4 ... hdgeant4 run.mac /group/halld/Software/hd_utilities/b1pi_test/b1pi_test.sh: line 141: hdgeant4: command not found Running mcsmear ... mcsmear -PJANA:BATCH_MODE=1 -PTHREAD_TIMEOUT=500 hdgeant.hddm /group/halld/Software/hd_utilities/b1pi_test/b1pi_test.sh: line 146: mcsmear: command not found Running hd_root with danarest ... hd_root -PJANA:BATCH_MODE=1 --nthreads=1 -PTHREAD_TIMEOUT=500 -PPLUGINS=danarest hdgeant_smeared.hddm /group/halld/Software/hd_utilities/b1pi_test/b1pi_test.sh: line 151: hd_root: command not found Running hd_root with b1pi_hists & monitoring_hists ... hd_root -PJANA:BATCH_MODE=1 --nthreads=1 -PTHREAD_TIMEOUT=500 -PPLUGINS=b1pi_hists,monitoring_hists dana_rest.hddm /group/halld/Software/hd_utilities/b1pi_test/b1pi_test.sh: line 156: hd_root: command not found Create plots root -b -q mk_pics.C ------------------------------------------------------------------ | Welcome to ROOT 6.24/06 https://root.cern | | (c) 1995-2021, The ROOT Team; conception: R. Brun, F. Rademakers | | Built for linuxx8664gcc on Sep 02 2021, 14:20:23 | | From tags/v6-24-06@v6-24-06 | | With c++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-44) | | Try '.help', '.demo', '.license', '.credits', '.quit'/'.q' | ------------------------------------------------------------------ Processing mk_pics.C... Error in : file /u/scratch/gluex/b1pi/2022-09-01/Linux_RHEL7-x86_64-gcc4.8.5/11366/hd_root.root does not exist gdb.printing.register_pretty_printer(gdb.current_objfile(), gdb.printing.register_pretty_printer(gdb.current_objfile(), #0 0x00007fdeaddf460c in waitpid () from /lib64/libc.so.6 #1 0x00007fdeadd71f62 in do_system () from /lib64/libc.so.6 #2 0x00007fdeae8daa6c in TUnixSystem::StackTrace() () from /usr/lib64/root/libCore.so.6.24 #3 0x00007fdea692d578 in cling::MultiplexInterpreterCallbacks::PrintStackTrace() () from /usr/lib64/root/libCling.so #4 0x00007fdea6924a2a in cling_runtime_internal_throwIfInvalidPointer () from /usr/lib64/root/libCling.so #5 0x00007fdeaf098127 in ?? () #6 0x00007ffd5a0dbd60 in ?? () #7 0x00007fdeaf0a0788 in ?? () #8 0x0000000000000000 in ?? () terminate called after throwing an instance of 'cling::InvalidDerefException' what(): Trying to dereference null pointer or trying to call routine taking non-null arguments Save test data python3 update_db.py Traceback (most recent call last): File "update_db.py", line 2, in import MySQLdb ModuleNotFoundError: No module named 'MySQLdb' #count events sh: hddm-xml: command not found #count b1_pi.hddm 0 sh: hddm-xml: command not found #count hdgeant.hddm 0 sh: hddm-xml: command not found #count hdgeant_smeared.hddm 0 sh: hddm-xml: command not found #count dana_rest.hddm 0 sh: hddm-xml: command not found #count dana_rest_b1pi.hddm 0 mkdir: created directory ‘/group/halld/www/halldweb/html/b1pi/2022-09-01/Linux_RHEL7-x86_64-gcc4.8.5’ mkdir: created directory ‘/group/halld/www/halldweb/html/b1pi/2022-09-01/Linux_RHEL7-x86_64-gcc4.8.5/Run11366’ cp: cannot stat ‘*.pdf’: No such file or directory cp: cannot stat ‘*.gif’: No such file or directory ‘index.html’ -> ‘/group/halld/www/halldweb/html/b1pi/2022-09-01/Linux_RHEL7-x86_64-gcc4.8.5/Run11366/index.html’ mkdir: created directory ‘/u/scratch/gluex/b1pi/2022-09-01/Linux_RHEL7-x86_64-gcc4.8.5/30480’ info: number of threads not defined, using default value 1 info: vertex parameters not defined, using default values 0 0 50 80 info: random number seed not defined, using genr8 default (different seed each run) NEVENTS = 100000 VERTEX = 0 0 50 80 NTHREADS = 1 B1PI_TEST_DIR = /group/halld/Software/hd_utilities/b1pi_test RUN = 30480 SEED = Copying script files and macros ... ‘/group/halld/Software/hd_utilities/b1pi_test/b1pi_cron_one.sh’ -> ‘./b1pi_cron_one.sh’ ‘/group/halld/Software/hd_utilities/b1pi_test/b1pi_cron.sh’ -> ‘./b1pi_cron.sh’ ‘/group/halld/Software/hd_utilities/b1pi_test/b1pi_cron_two.sh’ -> ‘./b1pi_cron_two.sh’ ‘/group/halld/Software/hd_utilities/b1pi_test/b1pi_cron_two.sh~’ -> ‘./b1pi_cron_two.sh~’ ‘/group/halld/Software/hd_utilities/b1pi_test/b1_pi.input’ -> ‘./b1_pi.input’ ‘/group/halld/Software/hd_utilities/b1pi_test/b1pi_message.sh’ -> ‘./b1pi_message.sh’ ‘/group/halld/Software/hd_utilities/b1pi_test/b1pi_test.sh’ -> ‘./b1pi_test.sh’ ‘/group/halld/Software/hd_utilities/b1pi_test/b1pi_test_valgrind.sh’ -> ‘./b1pi_test_valgrind.sh’ ‘/group/halld/Software/hd_utilities/b1pi_test/hddm_counter.pl’ -> ‘./hddm_counter.pl’ ‘/group/halld/Software/hd_utilities/b1pi_test/index.html’ -> ‘./index.html’ cp: omitting directory ‘/group/halld/Software/hd_utilities/b1pi_test/macros’ ‘/group/halld/Software/hd_utilities/b1pi_test/my_b1pi_test.sh’ -> ‘./my_b1pi_test.sh’ ‘/group/halld/Software/hd_utilities/b1pi_test/README’ -> ‘./README’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/anal1.C’ -> ‘./anal1.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/b1_pi.C’ -> ‘./b1_pi.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/b1pi_gen.C’ -> ‘./b1pi_gen.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/b1pi_gen.h’ -> ‘./b1pi_gen.h’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/b1_pi.h’ -> ‘./b1_pi.h’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/b1pi_rec.C’ -> ‘./b1pi_rec.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/b1pi_rec.h’ -> ‘./b1pi_rec.h’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/fit_voigt.C’ -> ‘./fit_voigt.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/makeallplots.C’ -> ‘./makeallplots.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/mass_X.C’ -> ‘./mass_X.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/mk_pics.C’ -> ‘./mk_pics.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/momentum.C’ -> ‘./momentum.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/StandardLabels.C’ -> ‘./StandardLabels.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/theta.C’ -> ‘./theta.C’ ‘/group/halld/Software/hd_utilities/b1pi_test/macros/update_db.py’ -> ‘./update_db.py’ Running genr8 ... /group/halld/Software/hd_utilities/b1pi_test/b1pi_test.sh: line 111: genr8: command not found Converting generated events to HDDM ... /group/halld/Software/hd_utilities/b1pi_test/b1pi_test.sh: line 114: genr8_2_hddm: command not found Creating control.in file ... Running hdgeant4 ... hdgeant4 run.mac /group/halld/Software/hd_utilities/b1pi_test/b1pi_test.sh: line 141: hdgeant4: command not found Running mcsmear ... mcsmear -PJANA:BATCH_MODE=1 -PTHREAD_TIMEOUT=500 hdgeant.hddm /group/halld/Software/hd_utilities/b1pi_test/b1pi_test.sh: line 146: mcsmear: command not found Running hd_root with danarest ... hd_root -PJANA:BATCH_MODE=1 --nthreads=1 -PTHREAD_TIMEOUT=500 -PPLUGINS=danarest hdgeant_smeared.hddm /group/halld/Software/hd_utilities/b1pi_test/b1pi_test.sh: line 151: hd_root: command not found Running hd_root with b1pi_hists & monitoring_hists ... hd_root -PJANA:BATCH_MODE=1 --nthreads=1 -PTHREAD_TIMEOUT=500 -PPLUGINS=b1pi_hists,monitoring_hists dana_rest.hddm /group/halld/Software/hd_utilities/b1pi_test/b1pi_test.sh: line 156: hd_root: command not found Create plots root -b -q mk_pics.C ------------------------------------------------------------------ | Welcome to ROOT 6.24/06 https://root.cern | | (c) 1995-2021, The ROOT Team; conception: R. Brun, F. Rademakers | | Built for linuxx8664gcc on Sep 02 2021, 14:20:23 | | From tags/v6-24-06@v6-24-06 | | With c++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-44) | | Try '.help', '.demo', '.license', '.credits', '.quit'/'.q' | ------------------------------------------------------------------ Processing mk_pics.C... Error in : file /u/scratch/gluex/b1pi/2022-09-01/Linux_RHEL7-x86_64-gcc4.8.5/30480/hd_root.root does not exist gdb.printing.register_pretty_printer(gdb.current_objfile(), gdb.printing.register_pretty_printer(gdb.current_objfile(), #0 0x00007f9664ddc60c in waitpid () from /lib64/libc.so.6 #1 0x00007f9664d59f62 in do_system () from /lib64/libc.so.6 #2 0x00007f96658c2a6c in TUnixSystem::StackTrace() () from /usr/lib64/root/libCore.so.6.24 #3 0x00007f965d915578 in cling::MultiplexInterpreterCallbacks::PrintStackTrace() () from /usr/lib64/root/libCling.so #4 0x00007f965d90ca2a in cling_runtime_internal_throwIfInvalidPointer () from /usr/lib64/root/libCling.so #5 0x00007f9666080127 in ?? () #6 0x00007ffd46ed8da0 in ?? () #7 0x00007f9666088788 in ?? () #8 0x0000000000000000 in ?? () terminate called after throwing an instance of 'cling::InvalidDerefException' what(): Trying to dereference null pointer or trying to call routine taking non-null arguments Save test data python3 update_db.py Traceback (most recent call last): File "update_db.py", line 2, in import MySQLdb ModuleNotFoundError: No module named 'MySQLdb' #count events sh: hddm-xml: command not found #count b1_pi.hddm 0 sh: hddm-xml: command not found #count hdgeant.hddm 0 sh: hddm-xml: command not found #count hdgeant_smeared.hddm 0 sh: hddm-xml: command not found #count dana_rest.hddm 0 sh: hddm-xml: command not found #count dana_rest_b1pi.hddm 0 mkdir: created directory ‘/group/halld/www/halldweb/html/b1pi/2022-09-01/Linux_RHEL7-x86_64-gcc4.8.5/Run30480’ cp: cannot stat ‘*.pdf’: No such file or directory cp: cannot stat ‘*.gif’: No such file or directory ‘index.html’ -> ‘/group/halld/www/halldweb/html/b1pi/2022-09-01/Linux_RHEL7-x86_64-gcc4.8.5/Run30480/index.html’