Pseudo-terminal will not be allocated because stdin is not a terminal. ======= directory tag mismatch found ======= == package being checked = sim-recon == prerequisite package = jana == prerequisite's home directory = /group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.5/jana/jana_0.7.5p2^root6.06.08/Linux_RHEL7-x86_64-gcc4.8.5 == directory tag in home directory name = root6.06.08 == sim-recon's prerequisite xml file = /u/scratch/gluex/nightly/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/sim-recon/sim-recon_prereqs_version.xml == no directory tag in prerequisite xml file for jana removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/b1_pi.input' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/b1pi_gen.C' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/makeallplots.C' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/theta.C' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/b1pi_cron.sh~' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/mk_pics.C' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/index.html' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/anal1.C' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/README' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/mass_X.C' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/control.in' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/my_b1pi_test.sh' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/b1pi_rec.C' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/fit_voigt.C' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/b1pi_cron_one.sh~' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/b1_pi.h' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/hddm_counter.pl' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/b1pi_gen.h' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/b1_pi.C' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/b1pi_rec.h' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/b1pi_cron.sh' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/b1pi_cron_one.sh' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/b1pi_message.sh' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/StandardLabels.C' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/momentum.C' removed '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5/b1pi_test.sh' removed directory: '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5' mkdir: created directory '/u/scratch/gluex/b1pi/2016-10-17/Linux_RHEL7-x86_64-gcc4.8.5' info: number of threads not defined, using default value 1 info: vertex parameters not defined, using default values 0 0 50 80 NEVENTS = 150000 VERTEX = 0 0 50 80 NTHREADS = 1 B1PI_TEST_DIR = /group/halld/Software/scripts/b1pi_test Copying script files and macros ... '/group/halld/Software/scripts/b1pi_test/b1pi_cron_one.sh' -> './b1pi_cron_one.sh' '/group/halld/Software/scripts/b1pi_test/b1pi_cron_one.sh~' -> './b1pi_cron_one.sh~' '/group/halld/Software/scripts/b1pi_test/b1pi_cron.sh' -> './b1pi_cron.sh' '/group/halld/Software/scripts/b1pi_test/b1pi_cron.sh~' -> './b1pi_cron.sh~' '/group/halld/Software/scripts/b1pi_test/b1_pi.input' -> './b1_pi.input' '/group/halld/Software/scripts/b1pi_test/b1pi_message.sh' -> './b1pi_message.sh' '/group/halld/Software/scripts/b1pi_test/b1pi_test.sh' -> './b1pi_test.sh' '/group/halld/Software/scripts/b1pi_test/hddm_counter.pl' -> './hddm_counter.pl' '/group/halld/Software/scripts/b1pi_test/index.html' -> './index.html' cp: omitting directory '/group/halld/Software/scripts/b1pi_test/macros' '/group/halld/Software/scripts/b1pi_test/my_b1pi_test.sh' -> './my_b1pi_test.sh' '/group/halld/Software/scripts/b1pi_test/README' -> './README' '/group/halld/Software/scripts/b1pi_test/macros/anal1.C' -> './anal1.C' '/group/halld/Software/scripts/b1pi_test/macros/b1_pi.C' -> './b1_pi.C' '/group/halld/Software/scripts/b1pi_test/macros/b1pi_gen.C' -> './b1pi_gen.C' '/group/halld/Software/scripts/b1pi_test/macros/b1pi_gen.h' -> './b1pi_gen.h' '/group/halld/Software/scripts/b1pi_test/macros/b1_pi.h' -> './b1_pi.h' '/group/halld/Software/scripts/b1pi_test/macros/b1pi_rec.C' -> './b1pi_rec.C' '/group/halld/Software/scripts/b1pi_test/macros/b1pi_rec.h' -> './b1pi_rec.h' '/group/halld/Software/scripts/b1pi_test/macros/fit_voigt.C' -> './fit_voigt.C' '/group/halld/Software/scripts/b1pi_test/macros/makeallplots.C' -> './makeallplots.C' '/group/halld/Software/scripts/b1pi_test/macros/mass_X.C' -> './mass_X.C' '/group/halld/Software/scripts/b1pi_test/macros/mk_pics.C' -> './mk_pics.C' '/group/halld/Software/scripts/b1pi_test/macros/momentum.C' -> './momentum.C' '/group/halld/Software/scripts/b1pi_test/macros/StandardLabels.C' -> './StandardLabels.C' '/group/halld/Software/scripts/b1pi_test/macros/theta.C' -> './theta.C' Running genr8 ... Using runNo: 1501 Maximum number of events: 150000 Opening file b1_pi.ascii for output. Reading: beamp.x beamp.y beamp.z beamMass Found: 0.000000 0.000000 9.000000 0.000000 Reading: targetp.x targetp.y targetp.z targetMass Found: 0.000000 0.000000 0.000000 0.938000 Reading: t-channelSlope Found: 5.000000 Reading: number of particles need to describe the decay Found: 12 Reading: part# chld1# chld2# prnt# Id nchld mass width chrg flag Found: 0 -1 -1 -1 14 0 0.938000 0.000000 1 11 Found: 1 2 3 -1 0 2 2.000000 0.100000 1 0 Found: 2 4 5 1 0 2 1.235000 0.142000 1 0 Found: 3 4 5 1 9 0 0.140000 0.000000 -1 11 Found: 4 6 7 2 0 2 0.783000 0.009000 0 0 Found: 5 6 7 2 8 0 0.140000 0.000000 1 11 Found: 6 8 9 4 0 2 0.776000 0.150000 0 0 Found: 7 10 11 4 7 2 0.135000 0.000000 0 0 Found: 8 10 11 6 8 0 0.140000 0.000000 1 11 Found: 9 10 11 6 9 0 0.140000 0.000000 -1 11 Found: 10 10 11 7 1 0 0.000000 0.000000 0 11 Found: 11 10 11 7 1 0 0.000000 0.000000 0 11 Found EOI---- Input File appears Fine. Calculating Lorentz Factor: 9000 Calculating Lorentz Factor: 8000 Calculating Lorentz Factor: 7000 Calculating Lorentz Factor: 6000 Calculating Lorentz Factor: 5000 Calculating Lorentz Factor: 4000 Calculating Lorentz Factor: 3000 Calculating Lorentz Factor: 2000 Calculating Lorentz Factor: 1000 Calculating Lorentz Factor: 100 Calculating Lorentz Factor: 90 Calculating Lorentz Factor: 80 Calculating Lorentz Factor: 70 Calculating Lorentz Factor: 60 Calculating Lorentz Factor: 50 Calculating Lorentz Factor: 40 Calculating Lorentz Factor: 30 Calculating Lorentz Factor: 20 Calculating Lorentz Factor: 10 Calculating Lorentz Factor: 0 Events generated: 100 Events accepted: 34 Events generated: 200 Events accepted: 74 Events generated: 300 Events accepted: 110 Events generated: 400 Events accepted: 149 Events generated: 500 Events accepted: 186 Events generated: 600 Events accepted: 231 Events generated: 700 Events accepted: 261 Events generated: 800 Events accepted: 297 Events generated: 900 Events accepted: 346 Events generated: 1000 Events accepted: 391 Events generated: 10000 Events accepted: 4337 Events generated: 20000 Events accepted: 8718 Events generated: 30000 Events accepted: 13047 Events generated: 40000 Events accepted: 17392 Events generated: 50000 Events accepted: 21748 Events generated: 60000 Events accepted: 26214 Events generated: 70000 Events accepted: 30612 Events generated: 80000 Events accepted: 35016 Events generated: 90000 Events accepted: 39389 Events generated: 100000 Events accepted: 43748 Events generated: 110000 Events accepted: 48194 Events generated: 120000 Events accepted: 52605 Events generated: 130000 Events accepted: 56974 Events generated: 140000 Events accepted: 61349 Events generated: 150000 Events accepted: 65773 Events generated: 160000 Events accepted: 70151 Events generated: 170000 Events accepted: 74479 Events generated: 180000 Events accepted: 78859 Events generated: 190000 Events accepted: 83303 Events generated: 200000 Events accepted: 87756 Events generated: 210000 Events accepted: 92152 Events generated: 220000 Events accepted: 96521 Events generated: 230000 Events accepted: 100880 Events generated: 240000 Events accepted: 105286 Events generated: 250000 Events accepted: 109632 Events generated: 260000 Events accepted: 114014 Events generated: 270000 Events accepted: 118402 Events generated: 280000 Events accepted: 122847 Events generated: 290000 Events accepted: 127184 Events generated: 300000 Events accepted: 131581 Events generated: 310000 Events accepted: 135843 Events generated: 320000 Events accepted: 140162 Events generated: 330000 Events accepted: 144584 Events generated: 340000 Events accepted: 148978 Max Lorentz Factor:0.001371 Events generated:342334 Events accepted:150000 Setting random number seed to: 1476745706 Converting generated events to HDDM ... shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Error in : getcwd() failed Error in : getcwd() failed Error in : getcwd() failed Error in : getcwd() failed Error in : getcwd() failed Error in : getcwd() failed Error in : getcwd() failed Error in : getcwd() failed Error in : getcwd() failed Error in : getcwd() failed Error in : getcwd() failed Error in : getcwd() failed Error in : getcwd() failed Error in : getcwd() failed Error in : getcwd() failed Unable to open file "b1_pi.ascii" for reading. Creating control.in file ... Running hdgeant ... /group/halld/Software/scripts/b1pi_test/b1pi_test.sh: line 94: control.in: Stale file handle Error in : getcwd() failed Error in : getcwd() failed Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory *** Break *** segmentation violation Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory =========================================================== There was a crash. This is the entire stack trace of all threads: =========================================================== #0 0x00007f563ae67b0c in waitpid () from /lib64/libc.so.6 #1 0x00007f563adec092 in do_system () from /lib64/libc.so.6 #2 0x00007f5640fbe019 in TUnixSystem::StackTrace (this=0x46e98e0) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/unix/src/TUnixSystem.cxx:2324 #3 0x00007f5640fbfd1c in TUnixSystem::DispatchSignals (this=0x46e98e0, sig=kSigSegmentationViolation) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/unix/src/TUnixSystem.cxx:3562 #4 #5 0x00007f563af0d3c1 in __strlen_sse2_pminub () from /lib64/libc.so.6 #6 0x00007f56327b16e1 in (anonymous namespace)::createCIImpl(std::unique_ptr >, int, char const* const*, char const*, bool) () from /group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.5/root/root-6.06.08/lib/libCling.so #7 0x00007f56327b291b in cling::CIFactory::createCI(llvm::StringRef, int, char const* const*, char const*) () from /group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.5/root/root-6.06.08/lib/libCling.so #8 0x00007f5632788dc5 in cling::IncrementalParser::IncrementalParser(cling::Interpreter*, int, char const* const*, char const*) () from /group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.5/root/root-6.06.08/lib/libCling.so #9 0x00007f5632731df8 in cling::Interpreter::Interpreter(int, char const* const*, char const*, bool) () from /group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.5/root/root-6.06.08/lib/libCling.so #10 0x00007f56326c4165 in TCling::TCling (this=0x47976b0, name=, title=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/meta/src/TCling.cxx:1098 #11 0x00007f56326c53de in CreateInterpreter (interpLibHandle=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/meta/src/TCling.cxx:578 #12 0x00007f5640e4d3a8 in TROOT::InitInterpreter (this=0x7f564129a860 ) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/base/src/TROOT.cxx:1767 #13 0x00007f5640e4d726 in ROOT::Internal::GetROOT2 () at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/base/src/TROOT.cxx:362 #14 0x00007f5640f8aa16 in ROOT::TGenericClassInfo::GetClass (this=0x7f56418b3080 ) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/meta/src/TGenericClassInfo.cxx:198 #15 0x00007f56414a3a3a in TGClient::Class () at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/build_dir/gui/gui/G__Gui.cxx:7078 #16 0x00007f5640efc3d2 in TQObject::Emit (this=this entry=0x47899d0, signal_name=signal_name entry=0x7f56415d5580 "RegisteredWindow(Window_t)", param=0) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/base/src/TQObject.cxx:607 #17 0x00007f56414d9613 in Emit (param=, signal=0x7f56415d5580 "RegisteredWindow(Window_t)", this=0x47899d0) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/build_dir/include/TQObject.h:127 #18 TGClient::RegisteredWindow (this=this entry=0x47899c0, w=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:964 #19 0x00007f56414d964e in TGClient::RegisterWindow (this=this entry=0x47899c0, w=w entry=0x478a270) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:514 #20 0x00007f56415a793e in TGWindow::TGWindow (this=0x478a270, c=0x47899c0, id=0, parent=0x0) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGWindow.cxx:92 #21 0x00007f564150e00c in TGFrame::TGFrame (this=0x478a270, c=, id=0, parent=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGFrame.cxx:202 #22 0x00007f56414d9855 in TGClient::TGClient (this=0x47899c0, dpyName=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:171 #23 0x00007f564146b339 in TGClientInit (this=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/build_dir/include/TObject.h:158 #24 __static_initialization_and_destruction_0 (__initialize_p=1, __priority=65535) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:84 #25 _GLOBAL__sub_I_TGClient.cxx(void) () at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:965 #26 0x00007f56423763a3 in _dl_init_internal () from /lib64/ld-linux-x86-64.so.2 #27 0x00007f564236846a in _dl_start_user () from /lib64/ld-linux-x86-64.so.2 #28 0x0000000000000001 in ?? () #29 0x00007fff90ac7680 in ?? () #30 0x0000000000000000 in ?? () =========================================================== /group/halld/Software/scripts/b1pi_test/b1pi_test.sh: line 105: 6643 Segmentation fault hdgeant Running mcsmear ... Error in : getcwd() failed Error in : getcwd() failed Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory *** Break *** segmentation violation Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory =========================================================== There was a crash. This is the entire stack trace of all threads: =========================================================== #0 0x00007f4039c6db0c in waitpid () from /lib64/libc.so.6 #1 0x00007f4039bf2092 in do_system () from /lib64/libc.so.6 #2 0x00007f403fdc4019 in TUnixSystem::StackTrace (this=0x15508e0) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/unix/src/TUnixSystem.cxx:2324 #3 0x00007f403fdc5d1c in TUnixSystem::DispatchSignals (this=0x15508e0, sig=kSigSegmentationViolation) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/unix/src/TUnixSystem.cxx:3562 #4 #5 0x00007f4039d133c1 in __strlen_sse2_pminub () from /lib64/libc.so.6 #6 0x00007f40317c96e1 in (anonymous namespace)::createCIImpl(std::unique_ptr >, int, char const* const*, char const*, bool) () from /group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.5/root/root-6.06.08/lib/libCling.so #7 0x00007f40317ca91b in cling::CIFactory::createCI(llvm::StringRef, int, char const* const*, char const*) () from /group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.5/root/root-6.06.08/lib/libCling.so #8 0x00007f40317a0dc5 in cling::IncrementalParser::IncrementalParser(cling::Interpreter*, int, char const* const*, char const*) () from /group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.5/root/root-6.06.08/lib/libCling.so #9 0x00007f4031749df8 in cling::Interpreter::Interpreter(int, char const* const*, char const*, bool) () from /group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.5/root/root-6.06.08/lib/libCling.so #10 0x00007f40316dc165 in TCling::TCling (this=0x15fc6b0, name=, title=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/meta/src/TCling.cxx:1098 #11 0x00007f40316dd3de in CreateInterpreter (interpLibHandle=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/meta/src/TCling.cxx:578 #12 0x00007f403fc533a8 in TROOT::InitInterpreter (this=0x7f40400a0860 ) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/base/src/TROOT.cxx:1767 #13 0x00007f403fc53726 in ROOT::Internal::GetROOT2 () at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/base/src/TROOT.cxx:362 #14 0x00007f403fd90a16 in ROOT::TGenericClassInfo::GetClass (this=0x7f40406b9080 ) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/meta/src/TGenericClassInfo.cxx:198 #15 0x00007f40402a9a3a in TGClient::Class () at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/build_dir/gui/gui/G__Gui.cxx:7078 #16 0x00007f403fd023d2 in TQObject::Emit (this=this entry=0x15ee9d0, signal_name=signal_name entry=0x7f40403db580 "RegisteredWindow(Window_t)", param=0) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/base/src/TQObject.cxx:607 #17 0x00007f40402df613 in Emit (param=, signal=0x7f40403db580 "RegisteredWindow(Window_t)", this=0x15ee9d0) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/build_dir/include/TQObject.h:127 #18 TGClient::RegisteredWindow (this=this entry=0x15ee9c0, w=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:964 #19 0x00007f40402df64e in TGClient::RegisterWindow (this=this entry=0x15ee9c0, w=w entry=0x15ef270) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:514 #20 0x00007f40403ad93e in TGWindow::TGWindow (this=0x15ef270, c=0x15ee9c0, id=0, parent=0x0) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGWindow.cxx:92 #21 0x00007f404031400c in TGFrame::TGFrame (this=0x15ef270, c=, id=0, parent=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGFrame.cxx:202 #22 0x00007f40402df855 in TGClient::TGClient (this=0x15ee9c0, dpyName=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:171 #23 0x00007f4040271339 in TGClientInit (this=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/build_dir/include/TObject.h:158 #24 __static_initialization_and_destruction_0 (__initialize_p=1, __priority=65535) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:84 #25 _GLOBAL__sub_I_TGClient.cxx(void) () at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:965 #26 0x00007f40406cb3a3 in _dl_init_internal () from /lib64/ld-linux-x86-64.so.2 #27 0x00007f40406bd46a in _dl_start_user () from /lib64/ld-linux-x86-64.so.2 #28 0x0000000000000003 in ?? () #29 0x00007ffcc693b65f in ?? () #30 0x00007ffcc693b667 in ?? () #31 0x00007ffcc693b67b in ?? () #32 0x0000000000000000 in ?? () =========================================================== /group/halld/Software/scripts/b1pi_test/b1pi_test.sh: line 108: 6788 Segmentation fault mcsmear -PJANA:BATCH_MODE=1 hdgeant.hddm Running hd_root with danarest ... Error in : getcwd() failed Error in : getcwd() failed Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory *** Break *** segmentation violation Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory =========================================================== There was a crash. This is the entire stack trace of all threads: =========================================================== #0 0x00007f359ac72b0c in waitpid () from /lib64/libc.so.6 #1 0x00007f359abf7092 in do_system () from /lib64/libc.so.6 #2 0x00007f35a0dc9019 in TUnixSystem::StackTrace (this=0x15748e0) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/unix/src/TUnixSystem.cxx:2324 #3 0x00007f35a0dcad1c in TUnixSystem::DispatchSignals (this=0x15748e0, sig=kSigSegmentationViolation) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/unix/src/TUnixSystem.cxx:3562 #4 #5 0x00007f359ad183c1 in __strlen_sse2_pminub () from /lib64/libc.so.6 #6 0x00007f35927ce6e1 in (anonymous namespace)::createCIImpl(std::unique_ptr >, int, char const* const*, char const*, bool) () from /group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.5/root/root-6.06.08/lib/libCling.so #7 0x00007f35927cf91b in cling::CIFactory::createCI(llvm::StringRef, int, char const* const*, char const*) () from /group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.5/root/root-6.06.08/lib/libCling.so #8 0x00007f35927a5dc5 in cling::IncrementalParser::IncrementalParser(cling::Interpreter*, int, char const* const*, char const*) () from /group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.5/root/root-6.06.08/lib/libCling.so #9 0x00007f359274edf8 in cling::Interpreter::Interpreter(int, char const* const*, char const*, bool) () from /group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.5/root/root-6.06.08/lib/libCling.so #10 0x00007f35926e1165 in TCling::TCling (this=0x16206b0, name=, title=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/meta/src/TCling.cxx:1098 #11 0x00007f35926e23de in CreateInterpreter (interpLibHandle=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/meta/src/TCling.cxx:578 #12 0x00007f35a0c583a8 in TROOT::InitInterpreter (this=0x7f35a10a5860 ) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/base/src/TROOT.cxx:1767 #13 0x00007f35a0c58726 in ROOT::Internal::GetROOT2 () at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/base/src/TROOT.cxx:362 #14 0x00007f35a0d95a16 in ROOT::TGenericClassInfo::GetClass (this=0x7f35a16be080 ) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/meta/src/TGenericClassInfo.cxx:198 #15 0x00007f35a12aea3a in TGClient::Class () at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/build_dir/gui/gui/G__Gui.cxx:7078 #16 0x00007f35a0d073d2 in TQObject::Emit (this=this entry=0x16129d0, signal_name=signal_name entry=0x7f35a13e0580 "RegisteredWindow(Window_t)", param=0) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/base/src/TQObject.cxx:607 #17 0x00007f35a12e4613 in Emit (param=, signal=0x7f35a13e0580 "RegisteredWindow(Window_t)", this=0x16129d0) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/build_dir/include/TQObject.h:127 #18 TGClient::RegisteredWindow (this=this entry=0x16129c0, w=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:964 #19 0x00007f35a12e464e in TGClient::RegisterWindow (this=this entry=0x16129c0, w=w entry=0x1613270) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:514 #20 0x00007f35a13b293e in TGWindow::TGWindow (this=0x1613270, c=0x16129c0, id=0, parent=0x0) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGWindow.cxx:92 #21 0x00007f35a131900c in TGFrame::TGFrame (this=0x1613270, c=, id=0, parent=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGFrame.cxx:202 #22 0x00007f35a12e4855 in TGClient::TGClient (this=0x16129c0, dpyName=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:171 #23 0x00007f35a1276339 in TGClientInit (this=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/build_dir/include/TObject.h:158 #24 __static_initialization_and_destruction_0 (__initialize_p=1, __priority=65535) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:84 #25 _GLOBAL__sub_I_TGClient.cxx(void) () at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:965 #26 0x00007f35a16d03a3 in _dl_init_internal () from /lib64/ld-linux-x86-64.so.2 #27 0x00007f35a16c246a in _dl_start_user () from /lib64/ld-linux-x86-64.so.2 #28 0x0000000000000005 in ?? () #29 0x00007ffc54ab0637 in ?? () #30 0x00007ffc54ab063f in ?? () #31 0x00007ffc54ab0653 in ?? () #32 0x00007ffc54ab0660 in ?? () #33 0x00007ffc54ab0673 in ?? () #34 0x0000000000000000 in ?? () =========================================================== Running hd_root with b1pi_hists & monitoring_hists ... /group/halld/Software/scripts/b1pi_test/b1pi_test.sh: line 111: 6935 Segmentation fault hd_root -PJANA:BATCH_MODE=1 --nthreads=$NTHREADS -PPLUGINS=danarest hdgeant_smeared.hddm Error in : getcwd() failed Error in : getcwd() failed Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory *** Break *** segmentation violation Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory =========================================================== There was a crash. This is the entire stack trace of all threads: =========================================================== #0 0x00007feb99662b0c in waitpid () from /lib64/libc.so.6 #1 0x00007feb995e7092 in do_system () from /lib64/libc.so.6 #2 0x00007feb9f7b9019 in TUnixSystem::StackTrace (this=0x2ca98e0) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/unix/src/TUnixSystem.cxx:2324 #3 0x00007feb9f7bad1c in TUnixSystem::DispatchSignals (this=0x2ca98e0, sig=kSigSegmentationViolation) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/unix/src/TUnixSystem.cxx:3562 #4 #5 0x00007feb997083c1 in __strlen_sse2_pminub () from /lib64/libc.so.6 #6 0x00007feb911be6e1 in (anonymous namespace)::createCIImpl(std::unique_ptr >, int, char const* const*, char const*, bool) () from /group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.5/root/root-6.06.08/lib/libCling.so #7 0x00007feb911bf91b in cling::CIFactory::createCI(llvm::StringRef, int, char const* const*, char const*) () from /group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.5/root/root-6.06.08/lib/libCling.so #8 0x00007feb91195dc5 in cling::IncrementalParser::IncrementalParser(cling::Interpreter*, int, char const* const*, char const*) () from /group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.5/root/root-6.06.08/lib/libCling.so #9 0x00007feb9113edf8 in cling::Interpreter::Interpreter(int, char const* const*, char const*, bool) () from /group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.5/root/root-6.06.08/lib/libCling.so #10 0x00007feb910d1165 in TCling::TCling (this=0x2d556b0, name=, title=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/meta/src/TCling.cxx:1098 #11 0x00007feb910d23de in CreateInterpreter (interpLibHandle=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/meta/src/TCling.cxx:578 #12 0x00007feb9f6483a8 in TROOT::InitInterpreter (this=0x7feb9fa95860 ) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/base/src/TROOT.cxx:1767 #13 0x00007feb9f648726 in ROOT::Internal::GetROOT2 () at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/base/src/TROOT.cxx:362 #14 0x00007feb9f785a16 in ROOT::TGenericClassInfo::GetClass (this=0x7feba00ae080 ) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/meta/src/TGenericClassInfo.cxx:198 #15 0x00007feb9fc9ea3a in TGClient::Class () at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/build_dir/gui/gui/G__Gui.cxx:7078 #16 0x00007feb9f6f73d2 in TQObject::Emit (this=this entry=0x2d479d0, signal_name=signal_name entry=0x7feb9fdd0580 "RegisteredWindow(Window_t)", param=0) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/base/src/TQObject.cxx:607 #17 0x00007feb9fcd4613 in Emit (param=, signal=0x7feb9fdd0580 "RegisteredWindow(Window_t)", this=0x2d479d0) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/build_dir/include/TQObject.h:127 #18 TGClient::RegisteredWindow (this=this entry=0x2d479c0, w=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:964 #19 0x00007feb9fcd464e in TGClient::RegisterWindow (this=this entry=0x2d479c0, w=w entry=0x2d48270) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:514 #20 0x00007feb9fda293e in TGWindow::TGWindow (this=0x2d48270, c=0x2d479c0, id=0, parent=0x0) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGWindow.cxx:92 #21 0x00007feb9fd0900c in TGFrame::TGFrame (this=0x2d48270, c=, id=0, parent=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGFrame.cxx:202 #22 0x00007feb9fcd4855 in TGClient::TGClient (this=0x2d479c0, dpyName=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:171 #23 0x00007feb9fc66339 in TGClientInit (this=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/build_dir/include/TObject.h:158 #24 __static_initialization_and_destruction_0 (__initialize_p=1, __priority=65535) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:84 #25 _GLOBAL__sub_I_TGClient.cxx(void) () at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/gui/gui/src/TGClient.cxx:965 #26 0x00007feba00c03a3 in _dl_init_internal () from /lib64/ld-linux-x86-64.so.2 #27 0x00007feba00b246a in _dl_start_user () from /lib64/ld-linux-x86-64.so.2 #28 0x0000000000000005 in ?? () #29 0x00007ffde82b262a in ?? () #30 0x00007ffde82b2632 in ?? () #31 0x00007ffde82b2646 in ?? () #32 0x00007ffde82b2653 in ?? () #33 0x00007ffde82b2679 in ?? () #34 0x0000000000000000 in ?? () =========================================================== Create plots /group/halld/Software/scripts/b1pi_test/b1pi_test.sh: line 114: 7089 Segmentation fault hd_root -PJANA:BATCH_MODE=1 --nthreads=$NTHREADS -PPLUGINS=b1pi_hists,monitoring_hists dana_rest.hddm Error in : getcwd() failed Error in : getcwd() failed Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory *** Break *** segmentation violation Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory Error in : getcwd() failed shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory =========================================================== There was a crash. This is the entire stack trace of all threads: =========================================================== #0 0x00007f7188c48b0c in waitpid () from /lib64/libc.so.6 #1 0x00007f7188bcd092 in do_system () from /lib64/libc.so.6 #2 0x00007f7189e6c019 in TUnixSystem::StackTrace (this=0x258b8e0) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/unix/src/TUnixSystem.cxx:2324 #3 0x00007f7189e6dd1c in TUnixSystem::DispatchSignals (this=0x258b8e0, sig=kSigSegmentationViolation) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/unix/src/TUnixSystem.cxx:3562 #4 #5 0x00007f7188cee3c1 in __strlen_sse2_pminub () from /lib64/libc.so.6 #6 0x00007f71859b76e1 in (anonymous namespace)::createCIImpl(std::unique_ptr >, int, char const* const*, char const*, bool) () from /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/lib/libCling.so #7 0x00007f71859b891b in cling::CIFactory::createCI(llvm::StringRef, int, char const* const*, char const*) () from /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/lib/libCling.so #8 0x00007f718598edc5 in cling::IncrementalParser::IncrementalParser(cling::Interpreter*, int, char const* const*, char const*) () from /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/lib/libCling.so #9 0x00007f7185937df8 in cling::Interpreter::Interpreter(int, char const* const*, char const*, bool) () from /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/lib/libCling.so #10 0x00007f71858ca165 in TCling::TCling (this=0x25ed940, name=, title=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/meta/src/TCling.cxx:1098 #11 0x00007f71858cb3de in CreateInterpreter (interpLibHandle=) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/meta/src/TCling.cxx:578 #12 0x00007f7189cfb3a8 in TROOT::InitInterpreter (this=0x7f718a148860 ) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/base/src/TROOT.cxx:1767 #13 0x00007f7189cfb726 in ROOT::Internal::GetROOT2 () at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/base/src/TROOT.cxx:362 #14 0x00007f7189d6d9e5 in TApplication::TApplication (this=0x25db530, appClassName=0x4013a0 "Rint", argc=0x7ffdbd61e48c, argv=0x7ffdbd61e588, numOptions=0) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/base/src/TApplication.cxx:144 #15 0x00007f7189999de1 in TRint::TRint (this=0x25db530, appClassName=, argc=, argv=, options=, numOptions=, noLogo=false) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/core/rint/src/TRint.cxx:143 #16 0x000000000040108e in main (argc=5, argv=0x7ffdbd61e588) at /u/group/halld/Software/builds/Linux_RHEL7-x86_64-gcc4.8.3/root/root-6.06.08/main/src/rmain.cxx:27 =========================================================== #count events /group/halld/Software/scripts/b1pi_test/b1pi_cron_one.sh: line 21: hddm_counter.pl: command not found #count b1_pi.hddm /group/halld/Software/scripts/b1pi_test/b1pi_cron_one.sh: line 22: hddm_counter.pl: command not found #count hdgeant.hddm /group/halld/Software/scripts/b1pi_test/b1pi_cron_one.sh: line 23: hddm_counter.pl: command not found #count hdgeant_smeared.hddm /group/halld/Software/scripts/b1pi_test/b1pi_cron_one.sh: line 24: hddm_counter.pl: command not found #count dana_rest.hddm /group/halld/Software/scripts/b1pi_test/b1pi_cron_one.sh: line 25: hddm_counter.pl: command not found #count dana_rest_b1pi.hddm cp: cannot stat '*.pdf': Stale file handle cp: cannot stat '*.gif': Stale file handle cp: cannot stat '*.html': Stale file handle